Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs12426566 | chr12:112315172 | T/C | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12427012 | chr12:112343374 | G/A | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12469233 | chr2:86476152 | C/T | 0.000407 | 192 | 17.33 | 10.73 | 14.1 | KM Plot |
| LIHC | rs12472390 | chr2:86475083 | T/C | 0.000407 | 192 | 17.33 | 10.73 | 14.1 | KM Plot |
| LIHC | rs12481921 | chr21:44414088 | T/C | 5.75E-6 | 192 | 2.7 | 13.85 | 13.57 | KM Plot |
| LIHC | rs12481947 | chr21:44414304 | T/C | 6.15E-6 | 191 | 2.7 | 13.85 | 13.65 | KM Plot |
| LIHC | rs12513108 | chr4:110754499 | T/C | 9.15E-5 | 181 | 13.65 | 13.58 | 3.43 | KM Plot |
| LIHC | rs12513391 | chr5:109774372 | C/T | 1.04E-5 | 192 | 13.97 | 8.67 | 0.65 | KM Plot |
| LIHC | rs12524774 | chr6:44100047 | T/C | 9.47E-5 | 192 | 13.58 | 9.43 | 3.67 | KM Plot |
| LIHC | rs12528844 | chr6:44108848 | C/T | 9.47E-5 | 192 | 13.58 | 9.43 | 3.67 | KM Plot |
| LIHC | rs12529211 | chr6:44109012 | G/T | 9.47E-5 | 192 | 13.58 | 9.43 | 3.67 | KM Plot |
| LIHC | rs12535964 | chr7:64415409 | A/G | 2.92E-7 | 190 | 2.9 | 5.22 | 14.03 | KM Plot |
| LIHC | rs12551668 | chr9:23543626 | C/G | 1.87E-12 | 192 | 0.47 | 13.87 | 12.9 | KM Plot |
| LIHC | rs12552290 | chr9:33082969 | C/T | 7.84E-6 | 192 | 10.27 | 15.07 | 12.53 | KM Plot |
| LIHC | rs12574873 | chr11:95006396 | C/A | 0.000356 | 190 | 13.35 | 19.5 | 3.03 | KM Plot |